IL_6HCJ_288

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUGCGG*CACGCGCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|C|1230
6HCJ|1|A2|C|1231
6HCJ|1|A2|U|1232
6HCJ|1|A2|G|1233
6HCJ|1|A2|C|1234
6HCJ|1|A2|G|1235
6HCJ|1|A2|G|1236
*
6HCJ|1|A2|C|1521
6HCJ|1|A2|A|1522
6HCJ|1|A2|C|1523
6HCJ|1|A2|G|1524
6HCJ|1|A2|C|1525
6HCJ|1|A2|G|1526
6HCJ|1|A2|C|1527
6HCJ|1|A2|G|1528

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain Q2

uS19

Chain R2

Ribosomal protein S16

Chain T2

uS13

Chain U2

eS19