IL_6HCJ_289

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGCUCAGCGUGUGCCUACC*GUAACCCGUUGAACCCC

Length

36 nucleotides

Bulged bases

6HCJ|1|A2|C|1553, 6HCJ|1|A2|A|1580, 6HCJ|1|A2|C|1581, 6HCJ|1|A2|U|1585, 6HCJ|1|A2|G|1587

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|1540
6HCJ|1|A2|G|1541
6HCJ|1|A2|C|1542
6HCJ|1|A2|U|1543
6HCJ|1|A2|C|1544
6HCJ|1|A2|A|1545
6HCJ|1|A2|G|1546
6HCJ|1|A2|C|1547
6HCJ|1|A2|G|1548
6HCJ|1|A2|U|1549
6HCJ|1|A2|G|1550
6HCJ|1|A2|U|1551
6HCJ|1|A2|G|1552
6HCJ|1|A2|C|1553
6HCJ|1|A2|C|1554
6HCJ|1|A2|U|1555
6HCJ|1|A2|A|1556
6HCJ|1|A2|C|1557
6HCJ|1|A2|C|1558
*
6HCJ|1|A2|G|1577
6HCJ|1|A2|U|1578
6HCJ|1|A2|A|1579
6HCJ|1|A2|A|1580
6HCJ|1|A2|C|1581
6HCJ|1|A2|C|1582
6HCJ|1|A2|C|1583
6HCJ|1|A2|G|1584
6HCJ|1|A2|U|1585
6HCJ|1|A2|U|1586
6HCJ|1|A2|G|1587
6HCJ|1|A2|A|1588
6HCJ|1|A2|A|1589
6HCJ|1|A2|C|1590
6HCJ|1|A2|C|1591
6HCJ|1|A2|C|1592
6HCJ|1|A2|C|1593

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain E2

uS3

Chain G2

Ribosomal protein S5

Chain L2

eS10

Chain R2

Ribosomal protein S16

Chain U2

eS19

Chain V2

uS10

Chain a2

eS25

Chain e2

uS14