IL_6HCJ_290

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UACG*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_290 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2876

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6HCJ|1|A2|U|1560
6HCJ|1|A2|A|1561
6HCJ|1|A2|C|1562
6HCJ|1|A2|G|1563
*
6HCJ|1|A2|C|1572
6HCJ|1|A2|G|1573
6HCJ|1|A2|C|1574
6HCJ|1|A2|G|1575

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain U2

eS19