IL_6HCJ_299
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAGACCGAUAGUCAACAAGUACCGUAAGGGAAAG*CUCGGCUCG
- Length
- 44 nucleotides
- Bulged bases
- 6HCJ|1|51|A|349, 6HCJ|1|51|U|354, 6HCJ|1|51|A|362, 6HCJ|1|81|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|C|345
6HCJ|1|51|G|346
6HCJ|1|51|A|347
6HCJ|1|51|G|348
6HCJ|1|51|A|349
6HCJ|1|51|C|350
6HCJ|1|51|C|351
6HCJ|1|51|G|352
6HCJ|1|51|A|353
6HCJ|1|51|U|354
6HCJ|1|51|A|355
6HCJ|1|51|G|356
6HCJ|1|51|U|357
6HCJ|1|51|C|358
6HCJ|1|51|A|359
6HCJ|1|51|A|360
6HCJ|1|51|C|361
6HCJ|1|51|A|362
6HCJ|1|51|A|363
6HCJ|1|51|G|364
6HCJ|1|51|U|365
6HCJ|1|51|A|366
6HCJ|1|51|C|367
6HCJ|1|51|C|368
6HCJ|1|51|G|369
6HCJ|1|51|U|370
6HCJ|1|51|A|371
6HCJ|1|51|A|372
6HCJ|1|51|G|373
6HCJ|1|51|G|374
6HCJ|1|51|G|375
6HCJ|1|51|A|376
6HCJ|1|51|A|377
6HCJ|1|51|A|378
6HCJ|1|51|G|379
*
6HCJ|1|81|C|21
6HCJ|1|81|U|22
6HCJ|1|81|C|23
6HCJ|1|81|G|24
6HCJ|1|81|G|25
6HCJ|1|81|C|26
6HCJ|1|81|U|27
6HCJ|1|81|C|28
6HCJ|1|81|G|29
Current chains
- Chain 51
- 28S ribosomal RNA
- Chain 81
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain C3
- uL4
- Chain L3
- eL13
- Chain Y3
- Ribosomal protein L26
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
Coloring options: