IL_6HCJ_303

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCGGCGGGGCGGAUCUC*GGGACCGCCCCCCGG

Length

32 nucleotides

Bulged bases

6HCJ|1|51|C|498, 6HCJ|1|51|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|494
6HCJ|1|51|C|495
6HCJ|1|51|G|496
6HCJ|1|51|G|497
6HCJ|1|51|C|498
6HCJ|1|51|G|499
6HCJ|1|51|G|500
6HCJ|1|51|G|504
6HCJ|1|51|G|505
6HCJ|1|51|C|506
6HCJ|1|51|G|507
6HCJ|1|51|G|508
6HCJ|1|51|A|509
6HCJ|1|51|U|510
6HCJ|1|51|C|511
6HCJ|1|51|U|512
6HCJ|1|51|C|515
*
6HCJ|1|51|G|646
6HCJ|1|51|G|647
6HCJ|1|51|G|648
6HCJ|1|51|A|649
6HCJ|1|51|C|650
6HCJ|1|51|C|651
6HCJ|1|51|G|652
6HCJ|1|51|C|653
6HCJ|1|51|C|654
6HCJ|1|51|C|655
6HCJ|1|51|C|656
6HCJ|1|51|C|657
6HCJ|1|51|C|658
6HCJ|1|51|G|659
6HCJ|1|51|G|660

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

eL13

Chain Q3

eL18

Chain a3

uL15