IL_6HCJ_306
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAGGCCCCG*CCCGGCAGCAGCAGCUC
- Length
- 27 nucleotides
- Bulged bases
- 6HCJ|1|51|A|732, 6HCJ|1|51|C|738, 6HCJ|1|51|C|738|||A, 6HCJ|1|51|C|924, 6HCJ|1|51|C|925, 6HCJ|1|51|G|933, 6HCJ|1|51|A|935, 6HCJ|1|51|C|936
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|G|731
6HCJ|1|51|A|732
6HCJ|1|51|A|733
6HCJ|1|51|G|734
6HCJ|1|51|G|735
6HCJ|1|51|C|736
6HCJ|1|51|C|737
6HCJ|1|51|C|738
6HCJ|1|51|C|738|||A
6HCJ|1|51|G|739
*
6HCJ|1|51|C|923
6HCJ|1|51|C|924
6HCJ|1|51|C|925
6HCJ|1|51|G|926
6HCJ|1|51|G|927
6HCJ|1|51|C|928
6HCJ|1|51|A|929
6HCJ|1|51|G|930
6HCJ|1|51|C|931
6HCJ|1|51|A|932
6HCJ|1|51|G|933
6HCJ|1|51|C|934
6HCJ|1|51|A|935
6HCJ|1|51|G|935|||A
6HCJ|1|51|C|936
6HCJ|1|51|U|937
6HCJ|1|51|C|938
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain C3
- uL4
- Chain F3
- uL30
- Chain M3
- Ribosomal protein L14
- Chain S3
- eL20
Coloring options: