IL_6HCJ_307

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAGGUGG*UGUUACAGCC

Length

19 nucleotides

Bulged bases

6HCJ|1|51|G|748, 6HCJ|1|51|U|914, 6HCJ|1|51|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|744
6HCJ|1|51|G|745
6HCJ|1|51|A|746
6HCJ|1|51|A|747
6HCJ|1|51|G|748
6HCJ|1|51|G|749
6HCJ|1|51|U|750
6HCJ|1|51|G|751
6HCJ|1|51|G|752
*
6HCJ|1|51|U|911
6HCJ|1|51|G|912
6HCJ|1|51|U|913
6HCJ|1|51|U|914
6HCJ|1|51|A|915
6HCJ|1|51|C|916
6HCJ|1|51|A|917
6HCJ|1|51|G|918
6HCJ|1|51|C|919
6HCJ|1|51|C|920

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain M3

Ribosomal protein L14

Chain S3

eL20