IL_6HCJ_308

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGCCACCCCUC*GCCCGGGGGAGGUUCUCUCGGGGC

Length

35 nucleotides

Bulged bases

6HCJ|1|51|C|1214, 6HCJ|1|51|C|1215, 6HCJ|1|51|A|1222, 6HCJ|1|51|G|1223, 6HCJ|1|51|G|1224, 6HCJ|1|51|U|1225, 6HCJ|1|51|U|1226, 6HCJ|1|51|C|1227, 6HCJ|1|51|U|1228, 6HCJ|1|51|C|1229, 6HCJ|1|51|U|1230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|1074
6HCJ|1|51|G|1075
6HCJ|1|51|C|1076
6HCJ|1|51|C|1077
6HCJ|1|51|A|1078
6HCJ|1|51|C|1079
6HCJ|1|51|C|1080
6HCJ|1|51|C|1081
6HCJ|1|51|C|1082
6HCJ|1|51|U|1083
6HCJ|1|51|C|1084
*
6HCJ|1|51|G|1213
6HCJ|1|51|C|1214
6HCJ|1|51|C|1215
6HCJ|1|51|C|1216
6HCJ|1|51|G|1217
6HCJ|1|51|G|1218
6HCJ|1|51|G|1219
6HCJ|1|51|G|1220
6HCJ|1|51|G|1221
6HCJ|1|51|A|1222
6HCJ|1|51|G|1223
6HCJ|1|51|G|1224
6HCJ|1|51|U|1225
6HCJ|1|51|U|1226
6HCJ|1|51|C|1227
6HCJ|1|51|U|1228
6HCJ|1|51|C|1229
6HCJ|1|51|U|1230
6HCJ|1|51|C|1231
6HCJ|1|51|G|1232
6HCJ|1|51|G|1233
6HCJ|1|51|G|1234
6HCJ|1|51|G|1235
6HCJ|1|51|C|1236

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

uL30

Chain b3

eL29