IL_6HCJ_311
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGGGCAGGGCGAAGCCAGAGGAAACUCUGGUGGAGGUCCGUAGCGGUCCUG*CGGUCGUCCGACCUGG
- Length
- 68 nucleotides
- Bulged bases
- 6HCJ|1|51|A|1563, 6HCJ|1|51|G|1571, 6HCJ|1|51|U|1572, 6HCJ|1|51|G|1577, 6HCJ|1|51|U|1591, 6HCJ|1|51|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|C|1541
6HCJ|1|51|U|1542
6HCJ|1|51|G|1543
6HCJ|1|51|G|1544
6HCJ|1|51|G|1545
6HCJ|1|51|C|1546
6HCJ|1|51|A|1547
6HCJ|1|51|G|1548
6HCJ|1|51|G|1549
6HCJ|1|51|G|1550
6HCJ|1|51|C|1551
6HCJ|1|51|G|1552
6HCJ|1|51|A|1553
6HCJ|1|51|A|1554
6HCJ|1|51|G|1555
6HCJ|1|51|C|1556
6HCJ|1|51|C|1557
6HCJ|1|51|A|1558
6HCJ|1|51|G|1559
6HCJ|1|51|A|1560
6HCJ|1|51|G|1561
6HCJ|1|51|G|1562
6HCJ|1|51|A|1563
6HCJ|1|51|A|1564
6HCJ|1|51|A|1565
6HCJ|1|51|C|1566
6HCJ|1|51|U|1567
6HCJ|1|51|C|1568
6HCJ|1|51|U|1569
6HCJ|1|51|G|1570
6HCJ|1|51|G|1571
6HCJ|1|51|U|1572
6HCJ|1|51|G|1573
6HCJ|1|51|G|1574
6HCJ|1|51|A|1575
6HCJ|1|51|G|1576
6HCJ|1|51|G|1577
6HCJ|1|51|U|1578
6HCJ|1|51|C|1579
6HCJ|1|51|C|1580
6HCJ|1|51|G|1581
6HCJ|1|51|U|1582
6HCJ|1|51|A|1583
6HCJ|1|51|G|1584
6HCJ|1|51|C|1585
6HCJ|1|51|G|1586
6HCJ|1|51|G|1587
6HCJ|1|51|U|1588
6HCJ|1|51|C|1589
6HCJ|1|51|C|1590
6HCJ|1|51|U|1591
6HCJ|1|51|G|1592
*
6HCJ|1|51|C|1603
6HCJ|1|51|G|1604
6HCJ|1|51|G|1605
6HCJ|1|51|U|1606
6HCJ|1|51|C|1607
6HCJ|1|51|G|1608
6HCJ|1|51|U|1609
6HCJ|1|51|C|1610
6HCJ|1|51|C|1611
6HCJ|1|51|G|1612
6HCJ|1|51|A|1613
6HCJ|1|51|C|1614
6HCJ|1|51|C|1615
6HCJ|1|51|U|1616
6HCJ|1|51|G|1617
6HCJ|1|51|G|1618
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A3
- Ribosomal protein L8
- Chain B3
- uL3
- Chain M2
- Ribosomal protein S11
- Chain O2
- uS15
- Chain R3
- eL19
- Chain g3
- eL34
- Chain j3
- Ribosomal protein L37
- Chain p3
- eL43
Coloring options: