3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGAAC*GAA
Length
8 nucleotides
Bulged bases
6HCJ|1|51|A|2428
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCJ_318 not in the Motif Atlas
Geometric match to IL_7A0S_047
Geometric discrepancy: 0.3067
The information below is about IL_7A0S_047
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_83150.2
Basepair signature
cWW-tHH-cWW-L-L
Number of instances in this motif group
4

Unit IDs

6HCJ|1|51|U|2415
6HCJ|1|51|G|2416
6HCJ|1|51|A|2417
6HCJ|1|51|A|2418
6HCJ|1|51|C|2419
*
6HCJ|1|51|G|2427
6HCJ|1|51|A|2428
6HCJ|1|51|A|2429

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain 1
nascent chain
Chain P3
uL22
Chain R3
eL19
Chain l3
eL39

Coloring options:


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