IL_6HCJ_326

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAUC*GUUGGAUUGUUCACCCACUAAUAG

Length

29 nucleotides

Bulged bases

6HCJ|1|51|A|4464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|4462
6HCJ|1|51|U|4463
6HCJ|1|51|A|4464
6HCJ|1|51|U|4465
6HCJ|1|51|C|4466
*
6HCJ|1|51|G|4491
6HCJ|1|51|U|4492
6HCJ|1|51|U|4493
6HCJ|1|51|G|4494
6HCJ|1|51|G|4495
6HCJ|1|51|A|4496
6HCJ|1|51|U|4497
6HCJ|1|51|U|4498
6HCJ|1|51|G|4499
6HCJ|1|51|U|4500
6HCJ|1|51|U|4501
6HCJ|1|51|C|4502
6HCJ|1|51|A|4503
6HCJ|1|51|C|4504
6HCJ|1|51|C|4505
6HCJ|1|51|C|4506
6HCJ|1|51|A|4507
6HCJ|1|51|C|4508
6HCJ|1|51|U|4509
6HCJ|1|51|A|4510
6HCJ|1|51|A|4511
6HCJ|1|51|U|4512
6HCJ|1|51|A|4513
6HCJ|1|51|G|4514

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

uL13

Chain V3

Ribosomal protein L23

Chain q3

Transfer RNA; tRNA