3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGCUCAGUAC*GGAACCGCA
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCJ|1|51|U|4594
6HCJ|1|51|G|4595
6HCJ|1|51|C|4596
6HCJ|1|51|U|4597
6HCJ|1|51|C|4598
6HCJ|1|51|A|4599
6HCJ|1|51|G|4600
6HCJ|1|51|U|4601
6HCJ|1|51|A|4602
6HCJ|1|51|C|4603
*
6HCJ|1|51|G|4608
6HCJ|1|51|G|4609
6HCJ|1|51|A|4610
6HCJ|1|51|A|4611
6HCJ|1|51|C|4612
6HCJ|1|51|C|4613
6HCJ|1|51|G|4614
6HCJ|1|51|C|4615
6HCJ|1|51|A|4616

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain B3
uL3
Chain H3
uL6
Chain V3
Ribosomal protein L23
Chain m3
eL40

Coloring options:

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