IL_6HCJ_331

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

6HCJ|1|51|A|4656, 6HCJ|1|51|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_331 not in the Motif Atlas

Homologous match to IL_8CRE_128

Geometric discrepancy: 0.3838

The information below is about IL_8CRE_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6HCJ|1|51|U|4641
6HCJ|1|51|U|4642
*
6HCJ|1|51|A|4655
6HCJ|1|51|A|4656
6HCJ|1|51|U|4657
6HCJ|1|51|G|4658

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain d3

eL31