IL_6HCJ_338

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUUA*UAACCUCGGG

Length

16 nucleotides

Bulged bases

6HCJ|1|A2|U|305, 6HCJ|1|A2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|C|216
6HCJ|1|A2|A|217
6HCJ|1|A2|U|218
6HCJ|1|A2|U|219
6HCJ|1|A2|U|220
6HCJ|1|A2|A|221
*
6HCJ|1|A2|U|300
6HCJ|1|A2|A|301
6HCJ|1|A2|A|302
6HCJ|1|A2|C|303
6HCJ|1|A2|C|304
6HCJ|1|A2|U|305
6HCJ|1|A2|C|306
6HCJ|1|A2|G|307
6HCJ|1|A2|G|308
6HCJ|1|A2|G|309

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain J2

eS8

Chain M2

Ribosomal protein S11