IL_6HCJ_339

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6HCJ|1|A2|U|368, 6HCJ|1|A2|C|369, 6HCJ|1|A2|G|370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_339 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.3142

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6HCJ|1|A2|U|366
6HCJ|1|A2|U|367
6HCJ|1|A2|U|368
6HCJ|1|A2|C|369
6HCJ|1|A2|G|370
6HCJ|1|A2|A|371
*
6HCJ|1|A2|U|393
6HCJ|1|A2|G|394

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain J2

eS8

Chain M2

Ribosomal protein S11