IL_6HCJ_340

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

6HCJ|1|A2|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_340 not in the Motif Atlas

Geometric match to IL_8P9A_396

Geometric discrepancy: 0.204

The information below is about IL_8P9A_396

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6HCJ|1|A2|U|487
6HCJ|1|A2|U|488
6HCJ|1|A2|A|489
*
6HCJ|1|A2|U|511
6HCJ|1|A2|A|512

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain K2

Ribosomal protein S9 (Predicted)

Chain Z2

eS24