IL_6HCJ_343

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUCGUAG*UCAAGAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|673
6HCJ|1|A2|C|674
6HCJ|1|A2|U|675
6HCJ|1|A2|C|676
6HCJ|1|A2|G|677
6HCJ|1|A2|U|678
6HCJ|1|A2|A|679
6HCJ|1|A2|G|680
*
6HCJ|1|A2|U|1025
6HCJ|1|A2|C|1026
6HCJ|1|A2|A|1027
6HCJ|1|A2|A|1028
6HCJ|1|A2|G|1029
6HCJ|1|A2|A|1030
6HCJ|1|A2|A|1031
6HCJ|1|A2|C|1032

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain M2

Ribosomal protein S11

Chain O2

uS15

Chain X2

Ribosomal protein S15a

Chain Y2

uS12