IL_6HCM_003

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6HCM|1|52|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_003 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.2147

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6HCM|1|52|A|12
6HCM|1|52|U|13
6HCM|1|52|C|14
*
6HCM|1|82|G|143
6HCM|1|82|U|144

Current chains

Chain 52

28S ribosomal RNA

Chain 82

5.8S ribosomal RNA

Nearby chains

Chain N3

Ribosomal protein L15

Chain X3

uL23