IL_6HCM_006
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- AU*AAAUGU
- Length
- 8 nucleotides
- Bulged bases
- 6HCM|1|52|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_006 not in the Motif Atlas
- Geometric match to IL_5TBW_007
- Geometric discrepancy: 0.3539
- The information below is about IL_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6HCM|1|52|A|121
6HCM|1|52|U|122
*
6HCM|1|52|A|147
6HCM|1|52|A|148
6HCM|1|52|A|149
6HCM|1|52|U|150
6HCM|1|52|G|151
6HCM|1|52|U|152
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G3
- eL8
- Chain N3
- Ribosomal protein L15
- Chain h3
- uL29
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