IL_6HCM_012
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 6HCM|1|52|G|409, 6HCM|1|52|G|413
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_012 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.2043
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6HCM|1|52|G|387
6HCM|1|52|A|388
6HCM|1|52|A|389
6HCM|1|52|C|390
*
6HCM|1|52|G|401
6HCM|1|52|A|402
6HCM|1|52|G|403
6HCM|1|52|U|404
6HCM|1|52|U|405
6HCM|1|52|C|406
6HCM|1|52|A|407
6HCM|1|52|A|408
6HCM|1|52|G|409
6HCM|1|52|A|410
6HCM|1|52|G|411
6HCM|1|52|G|412
6HCM|1|52|G|413
6HCM|1|52|C|414
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P3
- uL22
- Chain Y3
- Ribosomal protein L26
- Chain l3
- eL39
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