3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
GAGG*CCAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_017 not in the Motif Atlas
Geometric match to IL_6CZR_168
Geometric discrepancy: 0.2432
The information below is about IL_6CZR_168
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67743.1
Basepair signature
cWW-cWW-cWH-cWW
Number of instances in this motif group
9

Unit IDs

6HCM|1|52|G|462
6HCM|1|52|A|463
6HCM|1|52|G|464
6HCM|1|52|G|465
*
6HCM|1|52|C|690
6HCM|1|52|C|691
6HCM|1|52|A|692
6HCM|1|52|C|693

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain E3
60S ribosomal protein L6
Chain r3
eL28

Coloring options:


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