IL_6HCM_017
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GAGG*CCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_017 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.2432
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
6HCM|1|52|G|462
6HCM|1|52|A|463
6HCM|1|52|G|464
6HCM|1|52|G|465
*
6HCM|1|52|C|690
6HCM|1|52|C|691
6HCM|1|52|A|692
6HCM|1|52|C|693
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain E3
- 60S ribosomal protein L6
- Chain r3
- eL28
Coloring options: