IL_6HCM_024

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6HCM|1|52|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_024 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2831

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6HCM|1|52|G|508
6HCM|1|52|A|509
6HCM|1|52|U|510
*
6HCM|1|52|A|649
6HCM|1|52|C|650

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain a3

uL15