IL_6HCM_032

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CACCC*GGGGACGGUCUCUCG*G

Length

21 nucleotides

Bulged bases

6HCM|1|52|C|1079, 6HCM|1|52|A|1222, 6HCM|1|52|C|1231, 6HCM|1|52|G|1232, 6HCM|1|52|U|1226, 6HCM|1|52|C|1227, 6HCM|1|52|U|1228, 6HCM|1|52|C|1229, 6HCM|1|52|U|1230, 6HCM|1|52|C|1231, 6HCM|1|52|G|1232

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|C|1077
6HCM|1|52|A|1078
6HCM|1|52|C|1079
6HCM|1|52|C|1080
6HCM|1|52|C|1081
*
6HCM|1|52|G|1218
6HCM|1|52|G|1219
6HCM|1|52|G|1220
6HCM|1|52|G|1221
6HCM|1|52|A|1222
6HCM|1|52|C|1231
6HCM|1|52|G|1232
6HCM|1|52|G|1233
6HCM|1|52|U|1226
6HCM|1|52|C|1227
6HCM|1|52|U|1228
6HCM|1|52|C|1229
6HCM|1|52|U|1230
6HCM|1|52|C|1231
6HCM|1|52|G|1232
*
6HCM|1|52|G|1233

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain F3

uL30