3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CUC*GCCCG
Length
8 nucleotides
Bulged bases
6HCM|1|52|C|1214, 6HCM|1|52|C|1215
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_033 not in the Motif Atlas
Geometric match to IL_7A0S_030
Geometric discrepancy: 0.3067
The information below is about IL_7A0S_030
Detailed Annotation
Isolated near basepair
Broad Annotation
Isolated near basepair
Motif group
IL_42997.3
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
20

Unit IDs

6HCM|1|52|C|1082
6HCM|1|52|U|1083
6HCM|1|52|C|1084
*
6HCM|1|52|G|1213
6HCM|1|52|C|1214
6HCM|1|52|C|1215
6HCM|1|52|C|1216
6HCM|1|52|G|1217

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain F3
uL30
Chain b3
eL29

Coloring options:


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