3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CCG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_043 not in the Motif Atlas
Homologous match to IL_5TBW_027
Geometric discrepancy: 0.1728
The information below is about IL_5TBW_027
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6HCM|1|52|C|1520
6HCM|1|52|C|1521
6HCM|1|52|G|1522
*
6HCM|1|52|C|1655
6HCM|1|52|U|1656
6HCM|1|52|G|1657

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain C3
uL4
Chain a3
uL15

Coloring options:


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