IL_6HCM_048

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

6HCM|1|52|U|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_048 not in the Motif Atlas

Homologous match to IL_5TBW_032

Geometric discrepancy: 0.2405

The information below is about IL_5TBW_032

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6HCM|1|52|C|1590
6HCM|1|52|U|1591
6HCM|1|52|G|1592
*
6HCM|1|52|C|1603
6HCM|1|52|G|1604

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain j3

Ribosomal protein L37