IL_6HCM_060

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_060 not in the Motif Atlas

Homologous match to IL_5TBW_047

Geometric discrepancy: 0.1773

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6HCM|1|52|U|1861
6HCM|1|52|U|1862
6HCM|1|52|U|1863
*
6HCM|1|52|A|1871
6HCM|1|52|G|1872
6HCM|1|52|A|1873

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 72

5S ribosomal RNA; 5S rRNA

Chain I3

60S ribosomal protein L10

Chain b3

eL29