3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CGCCCGAUGC*GGG
Length
13 nucleotides
Bulged bases
6HCM|1|52|G|1919
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_062 not in the Motif Atlas
Geometric match to IL_3GM7_006
Geometric discrepancy: 0.2104
The information below is about IL_3GM7_006
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

6HCM|1|52|C|1911
6HCM|1|52|G|1912
6HCM|1|52|C|1913
6HCM|1|52|C|1914
6HCM|1|52|C|1915
6HCM|1|52|G|1916
6HCM|1|52|A|1917
6HCM|1|52|U|1918
6HCM|1|52|G|1919
6HCM|1|52|C|1920
*
6HCM|1|52|G|2063
6HCM|1|52|G|2064
6HCM|1|52|G|2065

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain F3
uL30
Chain O3
uL13
Chain S3
eL20
Chain f3
eL33

Coloring options:


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