IL_6HCM_066

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6HCM|1|52|U|1947

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_066 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.1731

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6HCM|1|52|G|1946
6HCM|1|52|U|1947
6HCM|1|52|G|1948
*
6HCM|1|52|C|2035
6HCM|1|52|C|2036

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 72

5S ribosomal RNA; 5S rRNA

Chain H3

uL6

Chain S3

eL20

Chain m3

eL40