IL_6HCM_067

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6HCM|1|52|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_067 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1885

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6HCM|1|52|G|2001
6HCM|1|52|A|2002
6HCM|1|52|G|2003
6HCM|1|52|U|2004
6HCM|1|52|G|2005
*
6HCM|1|52|C|2014
6HCM|1|52|U|2015
6HCM|1|52|C|2016

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain s3

uL10

Chain t3

Ribosomal protein L12