IL_6HCM_081

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

6HCM|1|52|G|2652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_081 not in the Motif Atlas

Geometric match to IL_7D7W_002

Geometric discrepancy: 0.2659

The information below is about IL_7D7W_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6HCM|1|52|C|2651
6HCM|1|52|G|2652
6HCM|1|52|C|2653
*
6HCM|1|52|G|2681
6HCM|1|52|G|2682

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain Z3

eL27

Chain c3

eL30

Chain g3

eL34

Chain p3

eL43