IL_6HCM_087
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 6HCM|1|52|U|2880
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_087 not in the Motif Atlas
- Homologous match to IL_5TBW_078
- Geometric discrepancy: 0.1836
- The information below is about IL_5TBW_078
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6HCM|1|52|C|2867
6HCM|1|52|G|2868
6HCM|1|52|U|2869
6HCM|1|52|A|2870
6HCM|1|52|A|2871
6HCM|1|52|C|2872
*
6HCM|1|52|G|2877
6HCM|1|52|G|2878
6HCM|1|52|A|2879
6HCM|1|52|U|2880
6HCM|1|52|A|2881
6HCM|1|52|A|2882
6HCM|1|52|G|2883
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain R3
- eL19
- Chain n3
- eL41
- Chain p3
- eL43
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