IL_6HCM_095

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCCAAAUGCCUCG*CGCGCAU

Length

20 nucleotides

Bulged bases

6HCM|1|52|A|3785, 6HCM|1|52|C|3791, 6HCM|1|52|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|G|3780
6HCM|1|52|C|3781
6HCM|1|52|C|3782
6HCM|1|52|A|3783
6HCM|1|52|A|3784
6HCM|1|52|A|3785
6HCM|1|52|U|3786
6HCM|1|52|G|3787
6HCM|1|52|C|3788
6HCM|1|52|C|3789
6HCM|1|52|U|3790
6HCM|1|52|C|3791
6HCM|1|52|G|3792
*
6HCM|1|52|C|3808
6HCM|1|52|G|3809
6HCM|1|52|C|3810
6HCM|1|52|G|3811
6HCM|1|52|C|3812
6HCM|1|52|A|3813
6HCM|1|52|U|3814

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain j1

eRF1(AAQ)

Chain n3

eL41