IL_6HCM_103

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UGGGAGG*CCGCCGGUGAAAUACCA

Length

24 nucleotides

Bulged bases

6HCM|1|52|A|3972, 6HCM|1|52|U|4049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|U|3968
6HCM|1|52|G|3969
6HCM|1|52|G|3970
6HCM|1|52|G|3971
6HCM|1|52|A|3972
6HCM|1|52|G|3973
6HCM|1|52|G|3974
*
6HCM|1|52|C|4037
6HCM|1|52|C|4038
6HCM|1|52|G|4039
6HCM|1|52|C|4040
6HCM|1|52|C|4041
6HCM|1|52|G|4042
6HCM|1|52|G|4043
6HCM|1|52|U|4044
6HCM|1|52|G|4045
6HCM|1|52|A|4046
6HCM|1|52|A|4047
6HCM|1|52|A|4048
6HCM|1|52|U|4049
6HCM|1|52|A|4050
6HCM|1|52|C|4051
6HCM|1|52|C|4052
6HCM|1|52|A|4053

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain u3

Ribosomal protein