3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
AUC*GUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_122 not in the Motif Atlas
Homologous match to IL_5TBW_115
Geometric discrepancy: 0.2712
The information below is about IL_5TBW_115
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6HCM|1|52|A|4590
6HCM|1|52|U|4591
6HCM|1|52|C|4592
*
6HCM|1|52|G|4618
6HCM|1|52|U|4619
6HCM|1|52|U|4620

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain B3
uL3
Chain V3
Ribosomal protein L23

Coloring options:


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