IL_6HCM_153

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_153 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.241

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6HCM|1|A1|U|116
6HCM|1|A1|C|117
6HCM|1|A1|C|118
6HCM|1|A1|U|119
6HCM|1|A1|U|120
6HCM|1|A1|U|121
*
6HCM|1|A1|A|343
6HCM|1|A1|U|344
6HCM|1|A1|U|345
6HCM|1|A1|C|346
6HCM|1|A1|G|347

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

eS4

Chain J1

eS8