IL_6HCM_154

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

6HCM|1|A1|C|142, 6HCM|1|A1|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|G|130
6HCM|1|A1|U|140
6HCM|1|A1|A|141
6HCM|1|A1|C|142
6HCM|1|A1|U|143
6HCM|1|A1|U|144
*
6HCM|1|A1|A|175
6HCM|1|A1|U|176
6HCM|1|A1|G|177
6HCM|1|A1|C|178
6HCM|1|A1|C|179
6HCM|1|A1|G|180
6HCM|1|A1|A|181
6HCM|1|A1|C|182

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain H1

40S ribosomal protein S6