IL_6HCM_158
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- CAGAUCAAAACCAACCCGGUCAGGCGGCUUUG*CUAG
- Length
- 36 nucleotides
- Bulged bases
- 6HCM|1|A1|U|227, 6HCM|1|A1|C|228, 6HCM|1|A1|C|234, 6HCM|1|A1|U|285, 6HCM|1|A1|U|286
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCM|1|A1|C|223
6HCM|1|A1|A|224
6HCM|1|A1|G|225
6HCM|1|A1|A|226
6HCM|1|A1|U|227
6HCM|1|A1|C|228
6HCM|1|A1|A|229
6HCM|1|A1|A|230
6HCM|1|A1|A|231
6HCM|1|A1|A|232
6HCM|1|A1|C|233
6HCM|1|A1|C|234
6HCM|1|A1|A|235
6HCM|1|A1|A|236
6HCM|1|A1|C|237
6HCM|1|A1|C|238
6HCM|1|A1|C|239
6HCM|1|A1|G|240
6HCM|1|A1|G|241
6HCM|1|A1|U|242
6HCM|1|A1|C|243
6HCM|1|A1|A|244
6HCM|1|A1|G|279
6HCM|1|A1|G|280
6HCM|1|A1|C|281
6HCM|1|A1|G|282
6HCM|1|A1|G|283
6HCM|1|A1|C|284
6HCM|1|A1|U|285
6HCM|1|A1|U|286
6HCM|1|A1|U|287
6HCM|1|A1|G|288
*
6HCM|1|A1|C|295
6HCM|1|A1|U|296
6HCM|1|A1|A|297
6HCM|1|A1|G|298
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain F1
- eS4
- Chain H1
- 40S ribosomal protein S6
- Chain J1
- eS8
- Chain M1
- Ribosomal protein S11
Coloring options: