IL_6HCM_159

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

6HCM|1|A1|A|313

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_159 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.317

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCM|1|A1|G|312
6HCM|1|A1|A|313
6HCM|1|A1|U|314
6HCM|1|A1|C|315
*
6HCM|1|A1|G|335
6HCM|1|A1|A|336
6HCM|1|A1|C|337

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

eS4

Chain H1

40S ribosomal protein S6