IL_6HCM_167

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

6HCM|1|A1|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_167 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.2532

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6HCM|1|A1|U|487
6HCM|1|A1|U|488
6HCM|1|A1|A|489
*
6HCM|1|A1|U|511
6HCM|1|A1|A|512

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

eS4

Chain K1

Ribosomal protein S9 (Predicted)

Chain Z1

eS24

Chain k1

ATP binding cassette subfamily E member 1