IL_6HCM_169

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CA*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_169 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.1669

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6HCM|1|A1|C|527
6HCM|1|A1|A|528
*
6HCM|1|A1|U|557
6HCM|1|A1|G|558
6HCM|1|A1|G|559

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain K1

Ribosomal protein S9 (Predicted)

Chain f1

40S ribosomal protein S30