3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CA*UGG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_169 not in the Motif Atlas
Geometric match to IL_5TBW_070
Geometric discrepancy: 0.1669
The information below is about IL_5TBW_070
Detailed Annotation
Single stack bend
Broad Annotation
Single stack bend
Motif group
IL_05035.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
38

Unit IDs

6HCM|1|A1|C|527
6HCM|1|A1|A|528
*
6HCM|1|A1|U|557
6HCM|1|A1|G|558
6HCM|1|A1|G|559

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain K1
Ribosomal protein S9 (Predicted)
Chain f1
40S ribosomal protein S30

Coloring options:


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