IL_6HCM_175

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGUGCCAG*CGGUAAUUCC

Length

18 nucleotides

Bulged bases

6HCM|1|A1|A|628, 6HCM|1|A1|U|630, 6HCM|1|A1|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|G|610
6HCM|1|A1|G|611
6HCM|1|A1|U|612
6HCM|1|A1|G|613
6HCM|1|A1|C|614
6HCM|1|A1|C|615
6HCM|1|A1|A|616
6HCM|1|A1|G|617
*
6HCM|1|A1|C|624
6HCM|1|A1|G|625
6HCM|1|A1|G|626
6HCM|1|A1|U|627
6HCM|1|A1|A|628
6HCM|1|A1|A|629
6HCM|1|A1|U|630
6HCM|1|A1|U|631
6HCM|1|A1|C|632
6HCM|1|A1|C|633

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain E1

uS3

Chain Y1

uS12

Chain f1

40S ribosomal protein S30

Chain j1

eRF1(AAQ)

Chain w3

mRNA