3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
AGAGUGUUCAAAGCAG*CUGGAU
Length
22 nucleotides
Bulged bases
6HCM|1|A1|G|821
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCM|1|A1|A|816
6HCM|1|A1|G|817
6HCM|1|A1|A|818
6HCM|1|A1|G|819
6HCM|1|A1|U|820
6HCM|1|A1|G|821
6HCM|1|A1|U|822
6HCM|1|A1|U|823
6HCM|1|A1|C|824
6HCM|1|A1|A|825
6HCM|1|A1|A|826
6HCM|1|A1|A|827
6HCM|1|A1|G|828
6HCM|1|A1|C|829
6HCM|1|A1|A|830
6HCM|1|A1|G|831
*
6HCM|1|A1|C|843
6HCM|1|A1|U|844
6HCM|1|A1|G|845
6HCM|1|A1|G|846
6HCM|1|A1|A|847
6HCM|1|A1|U|848

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain F1
eS4
Chain K1
Ribosomal protein S9 (Predicted)
Chain Z1
eS24

Coloring options:

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