IL_6HCM_188

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGGCCGGGG*CAAGAAUG

Length

17 nucleotides

Bulged bases

6HCM|1|A1|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|C|927
6HCM|1|A1|G|928
6HCM|1|A1|G|929
6HCM|1|A1|C|930
6HCM|1|A1|C|931
6HCM|1|A1|G|932
6HCM|1|A1|G|933
6HCM|1|A1|G|934
6HCM|1|A1|G|935
*
6HCM|1|A1|C|1007
6HCM|1|A1|A|1008
6HCM|1|A1|A|1009
6HCM|1|A1|G|1010
6HCM|1|A1|A|1011
6HCM|1|A1|A|1012
6HCM|1|A1|U|1013
6HCM|1|A1|G|1014

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S3a

Chain O1

uS15

Chain b1

eS26

Chain c1

40S ribosomal protein S27

Chain c3

eL30