IL_6HCM_198

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_198 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.18

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCM|1|A1|C|1230
6HCM|1|A1|C|1231
6HCM|1|A1|U|1232
*
6HCM|1|A1|G|1526
6HCM|1|A1|C|1527
6HCM|1|A1|G|1528

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain R1

Ribosomal protein S16

Chain T1

uS13

Chain U1

eS19