IL_6HCM_210

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

6HCM|1|A1|A|1580, 6HCM|1|A1|C|1581

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|G|1550
6HCM|1|A1|U|1551
6HCM|1|A1|G|1552
6HCM|1|A1|C|1553
6HCM|1|A1|C|1554
6HCM|1|A1|U|1555
6HCM|1|A1|A|1556
6HCM|1|A1|C|1557
6HCM|1|A1|C|1558
*
6HCM|1|A1|G|1577
6HCM|1|A1|U|1578
6HCM|1|A1|A|1579
6HCM|1|A1|A|1580
6HCM|1|A1|C|1581
6HCM|1|A1|C|1582

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain E1

uS3

Chain L1

eS10

Chain R1

Ribosomal protein S16

Chain U1

eS19

Chain V1

uS10

Chain e1

uS14