3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
GGGAUCG*CAUGAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_212 not in the Motif Atlas
Homologous match to IL_8C3A_469
Geometric discrepancy: 0.1284
The information below is about IL_8C3A_469
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_10092.1
Basepair signature
cWW-tSH-tSH-L-R-cWW-L-R-cWW
Number of instances in this motif group
1

Unit IDs

6HCM|1|A1|G|1604
6HCM|1|A1|G|1605
6HCM|1|A1|G|1606
6HCM|1|A1|A|1607
6HCM|1|A1|U|1608
6HCM|1|A1|C|1609
6HCM|1|A1|G|1610
*
6HCM|1|A1|C|1629
6HCM|1|A1|A|1630
6HCM|1|A1|U|1631
6HCM|1|A1|G|1632
6HCM|1|A1|A|1633
6HCM|1|A1|A|1634
6HCM|1|A1|C|1635

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain T1
uS13
Chain U1
eS19

Coloring options:


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