IL_6HCM_231

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGGUGGGGUCCGCG*UCGGCUACCCACCC

Length

28 nucleotides

Bulged bases

6HCM|1|52|C|449, 6HCM|1|52|C|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|G|437
6HCM|1|52|G|438
6HCM|1|52|G|439
6HCM|1|52|U|440
6HCM|1|52|G|441
6HCM|1|52|G|442
6HCM|1|52|G|443
6HCM|1|52|G|444
6HCM|1|52|U|445
6HCM|1|52|C|446
6HCM|1|52|C|447
6HCM|1|52|G|448
6HCM|1|52|C|449
6HCM|1|52|G|450
*
6HCM|1|52|U|1297
6HCM|1|52|C|1298
6HCM|1|52|G|1299
6HCM|1|52|G|1300
6HCM|1|52|C|1301
6HCM|1|52|U|1302
6HCM|1|52|A|1303
6HCM|1|52|C|1304
6HCM|1|52|C|1305
6HCM|1|52|C|1306
6HCM|1|52|A|1307
6HCM|1|52|C|1308
6HCM|1|52|C|1309
6HCM|1|52|C|1310

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain O3

uL13

Chain e3

eL32

Chain f3

eL33