IL_6HCM_233

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGUCCGGCCGUG*CCGGCGACCGGC

Length

24 nucleotides

Bulged bases

6HCM|1|52|U|492, 6HCM|1|52|G|666, 6HCM|1|52|A|667, 6HCM|1|52|C|668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|G|482
6HCM|1|52|G|483
6HCM|1|52|U|484
6HCM|1|52|C|485
6HCM|1|52|C|486
6HCM|1|52|G|487
6HCM|1|52|G|488
6HCM|1|52|C|489
6HCM|1|52|C|490
6HCM|1|52|G|491
6HCM|1|52|U|492
6HCM|1|52|G|493
*
6HCM|1|52|C|661
6HCM|1|52|C|662
6HCM|1|52|G|663
6HCM|1|52|G|664
6HCM|1|52|C|665
6HCM|1|52|G|666
6HCM|1|52|A|667
6HCM|1|52|C|668
6HCM|1|52|C|669
6HCM|1|52|G|670
6HCM|1|52|G|671
6HCM|1|52|C|672

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Q3

eL18

Chain r3

eL28