IL_6HCM_234

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGCG*CGGCG

Length

9 nucleotides

Bulged bases

6HCM|1|52|G|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_234 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.2801

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

6HCM|1|52|C|707
6HCM|1|52|G|708
6HCM|1|52|C|709
6HCM|1|52|G|710
*
6HCM|1|52|C|1286
6HCM|1|52|G|1287
6HCM|1|52|G|1288
6HCM|1|52|C|1289
6HCM|1|52|G|1290

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain e3

eL32

Chain f3

eL33